Will a full Godaddy account reset and fresh WP site mess up the current CF SSL config?

We already have a site set up on Godaddy with Cloudflare providing SSL currently (resolvelaw.in). The site and file folders have accumulated old abandoned files and folders and also some errors in the WP setup and database due to which we would like to do a full account reset.

I want to know if an account reset and new WP installation will be hampered by (or will mess-up) the current config?

Is there anything I need to do before (like suspend SSL) or after (replace NS) for a smooth transition?