I need to download the certificate generated in Cloudflare and upload it to Azure for my web app. How do I do this?
You won’t be able to download the Edge Certificates.
However, if you’re referring to the Origin Certificates, which are only valid for communication between Cloudflare and your server, you can follow this guide to create (and download) them:
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So I can’t generate something similar to a Let’s Encrypt SSL and download it and upload it to Azure in Cloudflare? I’m way out of my knowledge area here if you can’t tell 
You cannot use Cloudflare to generate a publicly trusted certificate for use on another site. If you want a Let’s Encrypt certificate on your origin site you can use that in conjuction with Cloudflare at the edge.
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