Speed is Not Increase

I’m adding Cloudflare to my website, www.habiliteclinics.com. While the website speed increased initially, SEO tools are now showing errors because they are treating the “www” and “non-www” versions as two separate websites. I’ve addressed the “www” and “non-www” redirection issue, but my website speed has decreased since adding Cloudflare.

Please suggest how to resolve this.