May I ask what error do you get when visiting your domain which is or isn’t using Cloudflare service, if so?
A great article about setting up an SSL for your domain at Cloudflare can be read in as a step-by-step instruction on the below article:
Below are some suggestions how to troubleshoot or check the settings regarding the SSL at Cloudflare:
Depending how did you get an SSL certificate?
Was it paid one?
Was it generated using a tool like Certbot or Let’s Encrypt (acme.sh, etc.)?
Was it created via cPanel AutoSSL?
There is an option to create an Cloudflare Origin CA certificate - max. up to 15 years. But, this SSL certificate is being trusted and for web traffic encryption only between Cloudflare and your origin/host server.
with it you can have Full SSL (Strict) mode enabled for your domain
Just to note, it also does not cover your e-mail service and you should not use it for your e-mail SSL.
Nevertheless, you should not visit your domain or a sub-domain(s) which are not being proxied via Cloudflare ( clouds) due to Web browser would show an error about SSL certificate not being trusted etc.